Faith Okamoto

👋🏽 My CV is available. 👋🏽

• But why?

  November 2025

  By Faith Okamoto

  Posted on November 23, 2025

  A Google Scholar alert sent me some clickbait recently. Well, clickbait for folks who work on structural variation (SV) genotyping. A preprint claiming to genotype SVs using short reads just as well as standard long read methods. I prefer to not critique preprints, but lucky me, its repository links to... [Read More]

  Tags:

  • published-code-critique
  • comments

• How verbose is that log?

  Debugging woes

  By Faith Okamoto

  Posted on November 8, 2025

  I’ve had a run of very frustrating debugging recently. This post is inspired by one of the issues I ran into: a verbose log that left out crucial information. [Read More]

  Tags:

  • debugging
  • logs

• The joy of tidying code

  a fulfilling side project

  By Faith Okamoto

  Posted on November 1, 2025

  I recently got a massive side project (that I’d previously hinted about) merged in to the master branch. A good time to reflect on why I even bothered. [Read More]

  Tags:

  • motivation
  • refactoring

• Revamping documentation

  or, a to-do list

  By Faith Okamoto

  Posted on October 25, 2025

  My lab is hoping to rework a toolkit’s documentation to follow Diátaxis principles. Or, more honestly, to follow any principles other than just being whatever was easiest to write. [Read More]

  Tags:

  • documentation
  • refactoring

• Examining demo code samples

  October 2025

  By Faith Okamoto

  Posted on October 12, 2025

  One of my roommates is a statistics PhD so I thought I might try looking at a statistics paper. Or, honestly, just the code from a statistics paper. Actually understanding the entire paper would require way more time than I am willing to devote to a single blog post. [Read More]

  Tags:

  • published-code-critique
  • examples

• Newer Posts
• Older Posts